HL_5T2C_118

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGCGCUCGC

Length

10 nucleotides

Bulged bases

5T2C|1|A|G|1408, 5T2C|1|A|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_118 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3806

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5T2C|1|A|G|1404
5T2C|1|A|C|1405
5T2C|1|A|G|1406
5T2C|1|A|C|1407
5T2C|1|A|G|1408
5T2C|1|A|C|1409
5T2C|1|A|U|1410
5T2C|1|A|C|1411
5T2C|1|A|G|1412
5T2C|1|A|C|1413

Current chains

Chain A

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L27a

Chain V

60S ribosomal protein L29