HL_5T2C_123

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGACCCGG

Length

9 nucleotides

Bulged bases

5T2C|1|AA|A|500, 5T2C|1|AA|C|502, 5T2C|1|AA|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_123 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3632

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5T2C|1|AA|C|497
5T2C|1|AA|C|498
5T2C|1|AA|G|499
5T2C|1|AA|A|500
5T2C|1|AA|C|501
5T2C|1|AA|C|502
5T2C|1|AA|C|503
5T2C|1|AA|G|504
5T2C|1|AA|G|505

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AQ

40S ribosomal protein S24

Chain Ar

40S ribosomal protein S4, X isoform