HL_5T62_020

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

5T62|1|A|U|879, 5T62|1|A|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T62_020 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0795

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5T62|1|A|A|876
5T62|1|A|C|877
5T62|1|A|G|878
5T62|1|A|U|879
5T62|1|A|G|880
5T62|1|A|C|881
5T62|1|A|A|882
5T62|1|A|A|883
5T62|1|A|A|884
5T62|1|A|U|885

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain c

60S ribosomal protein L17-A

Chain w

60S ribosomal protein L37-A