3D structure

PDB id
8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
ACGUGCAAAU
Length
10 nucleotides
Bulged bases
8C3A|1|1|U|875, 8C3A|1|1|A|879, 8C3A|1|1|A|880
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.8
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

8C3A|1|1|A|872
8C3A|1|1|C|873
8C3A|1|1|G|874
8C3A|1|1|U|875
8C3A|1|1|G|876
8C3A|1|1|C|877
8C3A|1|1|A|878
8C3A|1|1|A|879
8C3A|1|1|A|880
8C3A|1|1|U|881

Current chains

Chain 1
25S

Nearby chains

Chain AK
60S ribosomal protein L37-B
Chain k
60S ribosomal protein L3
Chain x
Ribosomal protein L22

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 1.7073 s