HL_5T62_027

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

5T62|1|A|G|1242, 5T62|1|A|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T62_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.217

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5T62|1|A|C|1239
5T62|1|A|A|1240
5T62|1|A|U|1241
5T62|1|A|G|1242
5T62|1|A|G|1243
5T62|1|A|A|1244
5T62|1|A|A|1245
5T62|1|A|G|1246
5T62|1|A|U|1247
5T62|1|A|C|1248
5T62|1|A|G|1249

Current chains

Chain A

25S Ribosomal RNA

Nearby chains