HL_5T6R_020

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

5T6R|1|A|U|879, 5T6R|1|A|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T6R_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0779

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5T6R|1|A|A|876
5T6R|1|A|C|877
5T6R|1|A|G|878
5T6R|1|A|U|879
5T6R|1|A|G|880
5T6R|1|A|C|881
5T6R|1|A|A|882
5T6R|1|A|A|883
5T6R|1|A|A|884
5T6R|1|A|U|885

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain c

60S ribosomal protein L17-A

Chain w

60S ribosomal protein L37-A