HL_5T6R_075
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5T6R|1|C|C|84, 5T6R|1|C|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T6R_075 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2136
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5T6R|1|C|U|69
5T6R|1|C|G|70
5T6R|1|C|A|71
5T6R|1|C|A|72
5T6R|1|C|U|73
5T6R|1|C|U|74
5T6R|1|C|G|75
5T6R|1|C|C|76
5T6R|1|C|A|77
5T6R|1|C|G|78
5T6R|1|C|A|79
5T6R|1|C|A|80
5T6R|1|C|U|81
5T6R|1|C|U|82
5T6R|1|C|C|83
5T6R|1|C|C|84
5T6R|1|C|G|85
5T6R|1|C|U|86
5T6R|1|C|G|87
5T6R|1|C|A|88
5T6R|1|C|A|89
Current chains
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 60S ribosomal protein L26-A
- Chain u
- 60S ribosomal protein L35-A
- Chain w
- 60S ribosomal protein L37-A
- Chain y
- 60S ribosomal protein L39
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