HL_5TBW_082

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

5TBW|1|A|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_082 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.0931

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5TBW|1|A|G|243
5TBW|1|A|A|244
5TBW|1|A|U|245
5TBW|1|A|G|246
5TBW|1|A|A|247
5TBW|1|A|U|248
5TBW|1|A|U|249
5TBW|1|A|C|250

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain M

40S ribosomal protein S11-A