HL_5TBW_116

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

5TBW|1|AR|U|133, 5TBW|1|AR|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_116 not in the Motif Atlas

Homologous match to HL_5TBW_004

Geometric discrepancy: 0.1258

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

5TBW|1|AR|C|132
5TBW|1|AR|U|133
5TBW|1|AR|U|134
5TBW|1|AR|C|135
5TBW|1|AR|G|136

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L15-A

Chain DJ

60S ribosomal protein L35-A