HL_5TBW_120

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

5TBW|1|AR|G|283, 5TBW|1|AR|A|284, 5TBW|1|AR|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_120 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.055

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5TBW|1|AR|U|278
5TBW|1|AR|U|279
5TBW|1|AR|U|280
5TBW|1|AR|G|281
5TBW|1|AR|G|282
5TBW|1|AR|G|283
5TBW|1|AR|A|284
5TBW|1|AR|A|285
5TBW|1|AR|U|286
5TBW|1|AR|G|287

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain CP

60S ribosomal protein L15-A

Chain DC

60S ribosomal protein L28

Chain DQ

60S ribosomal protein L42-A