HL_5TBW_208

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_208 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.0913

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5TBW|1|sR|A|829
5TBW|1|sR|U|830
5TBW|1|sR|U|831
5TBW|1|sR|U|832
5TBW|1|sR|U|833
5TBW|1|sR|G|834
5TBW|1|sR|U|835
5TBW|1|sR|U|836
5TBW|1|sR|G|837
5TBW|1|sR|G|838
5TBW|1|sR|U|839
5TBW|1|sR|U|840
5TBW|1|sR|U|841
5TBW|1|sR|C|842
5TBW|1|sR|U|843

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A