HL_5TBW_212

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5TBW|1|sR|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_212 not in the Motif Atlas

Homologous match to HL_4V88_209

Geometric discrepancy: 0.2441

The information below is about HL_4V88_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07372.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5TBW|1|sR|U|1055
5TBW|1|sR|U|1056
5TBW|1|sR|U|1057
5TBW|1|sR|U|1058
5TBW|1|sR|U|1059
5TBW|1|sR|U|1060
5TBW|1|sR|A|1061
5TBW|1|sR|A|1062
5TBW|1|sR|U|1063
5TBW|1|sR|G|1064

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d7

40S ribosomal protein S27-A

Chain s1

40S ribosomal protein S1-A