HL_5TBW_216

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

5TBW|1|sR|G|1243, 5TBW|1|sR|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_216 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1207

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5TBW|1|sR|A|1238
5TBW|1|sR|U|1239
5TBW|1|sR|U|1240
5TBW|1|sR|G|1241
5TBW|1|sR|A|1242
5TBW|1|sR|G|1243
5TBW|1|sR|A|1244
5TBW|1|sR|G|1245
5TBW|1|sR|C|1246
5TBW|1|sR|U|1247

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31