HL_5TBW_218

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5TBW|1|sR|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_218 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.0678

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5TBW|1|sR|C|1309
5TBW|1|sR|U|1310
5TBW|1|sR|U|1311
5TBW|1|sR|A|1312
5TBW|1|sR|A|1313
5TBW|1|sR|U|1314
5TBW|1|sR|U|1315
5TBW|1|sR|G|1316

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A