HL_5TBW_245

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

5TBW|1|sR|C|489, 5TBW|1|sR|U|493, 5TBW|1|sR|U|494, 5TBW|1|sR|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_245 not in the Motif Atlas

Homologous match to HL_8P9A_234

Geometric discrepancy: 0.2465

The information below is about HL_8P9A_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64292.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5TBW|1|sR|G|486
5TBW|1|sR|G|487
5TBW|1|sR|G|488
5TBW|1|sR|C|489
5TBW|1|sR|C|490
5TBW|1|sR|C|491
5TBW|1|sR|A|492
5TBW|1|sR|U|493
5TBW|1|sR|U|494
5TBW|1|sR|C|495
5TBW|1|sR|G|496
5TBW|1|sR|G|497
5TBW|1|sR|G|498
5TBW|1|sR|U|499
5TBW|1|sR|C|500
5TBW|1|sR|U|501

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A