HL_5TCU_003

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5TCU|1|A|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_003 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.2131

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5TCU|1|A|G|267
5TCU|1|A|G|268
5TCU|1|A|U|269
5TCU|1|A|A|270
5TCU|1|A|A|271
5TCU|1|A|C|272
5TCU|1|A|G|273
5TCU|1|A|G|274
5TCU|1|A|C|275

Current chains

Chain A

16S RRNA

Nearby chains

Chain S8

30S ribosomal protein S17

Chain SA

30S ribosomal protein S20