HL_5TCU_006

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5TCU|1|A|A|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_006 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3103

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5TCU|1|A|C|350
5TCU|1|A|U|351
5TCU|1|A|A|352
5TCU|1|A|C|353
5TCU|1|A|G|354
5TCU|1|A|G|355

Current chains

Chain A

16S RRNA

Nearby chains

Chain L1

50S ribosomal protein L19

Chain LN

50S ribosomal protein L14