HL_5TCU_008

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5TCU|1|A|U|429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_008 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3506

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5TCU|1|A|C|427
5TCU|1|A|U|428
5TCU|1|A|U|429
5TCU|1|A|C|430
5TCU|1|A|G|431
5TCU|1|A|G|432

Current chains

Chain A

16S RRNA

Nearby chains

Chain SB

30S ribosomal protein S3

Chain SC

30S ribosomal protein S4