HL_5TCU_010

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_010 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.3144

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5TCU|1|A|G|625
5TCU|1|A|C|626
5TCU|1|A|U|627
5TCU|1|A|C|628
5TCU|1|A|A|629
5TCU|1|A|A|630
5TCU|1|A|C|631

Current chains

Chain A

16S RRNA

Nearby chains

Chain S7

30S ribosomal protein S16

Chain SC

30S ribosomal protein S4