3D structure

PDB id
5TCU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Methicillin sensitive Staphylococcus aureus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCGCAAGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5TCU_016 not in the Motif Atlas
Geometric match to HL_7A0S_056
Geometric discrepancy: 0.3197
The information below is about HL_7A0S_056
Detailed Annotation
GNRA with extra cWW
Broad Annotation
GNRA with extra cWW
Motif group
HL_87268.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
16

Unit IDs

5TCU|1|A|C|906
5TCU|1|A|C|907
5TCU|1|A|G|908
5TCU|1|A|C|909
5TCU|1|A|A|910
5TCU|1|A|A|911
5TCU|1|A|G|912
5TCU|1|A|G|913

Current chains

Chain A
16S RRNA

Nearby chains

Chain B
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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