HL_5TCU_023

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGACAAAC

Length

9 nucleotides

Bulged bases

5TCU|1|A|A|1178, 5TCU|1|A|C|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_023 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3782

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5TCU|1|A|G|1175
5TCU|1|A|U|1176
5TCU|1|A|G|1177
5TCU|1|A|A|1178
5TCU|1|A|C|1179
5TCU|1|A|A|1180
5TCU|1|A|A|1181
5TCU|1|A|A|1182
5TCU|1|A|C|1183

Current chains

Chain A

16S RRNA

Nearby chains

Chain SG

30S ribosomal protein S7