HL_5TCU_029

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACGAUAU

Length

8 nucleotides

Bulged bases

5TCU|1|B|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_029 not in the Motif Atlas

Homologous match to HL_4WF9_001

Geometric discrepancy: 0.3477

The information below is about HL_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08550.2

Basepair signature

cWW-F-F-F-cSH

Number of instances in this motif group

3

Unit IDs

5TCU|1|B|G|67
5TCU|1|B|A|68
5TCU|1|B|C|69
5TCU|1|B|G|70
5TCU|1|B|A|71
5TCU|1|B|U|72
5TCU|1|B|A|73
5TCU|1|B|U|74

Current chains

Chain B

23S RRNA

Nearby chains

Chain L6

50S ribosomal protein L23

Chain LB

50S ribosomal protein L29

Chain LG

50S ribosomal protein L34