HL_5TCU_040

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

5TCU|1|B|A|372, 5TCU|1|B|A|373, 5TCU|1|B|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_040 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1451

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5TCU|1|B|G|370
5TCU|1|B|U|371
5TCU|1|B|A|372
5TCU|1|B|A|373
5TCU|1|B|U|374
5TCU|1|B|A|375
5TCU|1|B|A|376
5TCU|1|B|U|377
5TCU|1|B|C|378

Current chains

Chain B

23S RRNA

Nearby chains

Chain L7

50S ribosomal protein L24

Chain LJ

50S ribosomal protein L4