HL_5TCU_042

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5TCU|1|B|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_042 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.2191

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5TCU|1|B|G|456
5TCU|1|B|G|457
5TCU|1|B|A|458
5TCU|1|B|C|459
5TCU|1|B|C|460
5TCU|1|B|A|461
5TCU|1|B|U|462
5TCU|1|B|C|463

Current chains

Chain B

23S RRNA

Nearby chains