3D structure

PDB id
5TCU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Methicillin sensitive Staphylococcus aureus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUUUGUAGAA
Length
10 nucleotides
Bulged bases
5TCU|1|B|A|617
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5TCU_046 not in the Motif Atlas
Homologous match to HL_4WF9_018
Geometric discrepancy: 0.2538
The information below is about HL_4WF9_018
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_33597.2
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
135

Unit IDs

5TCU|1|B|U|609
5TCU|1|B|U|610
5TCU|1|B|U|611
5TCU|1|B|U|612
5TCU|1|B|G|613
5TCU|1|B|U|614
5TCU|1|B|A|615
5TCU|1|B|G|616
5TCU|1|B|A|617
5TCU|1|B|A|618

Current chains

Chain B
23S RRNA

Nearby chains

Chain L4
50S ribosomal protein L21
Chain LC
50S ribosomal protein L3
Chain LE
50S ribosomal protein L32
Chain LO
50S ribosomal protein L15

Coloring options:


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