HL_5TCU_046
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUUGUAGAA
- Length
- 10 nucleotides
- Bulged bases
- 5TCU|1|B|A|617
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TCU_046 not in the Motif Atlas
- Homologous match to HL_4WF9_018
- Geometric discrepancy: 0.2538
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5TCU|1|B|U|609
5TCU|1|B|U|610
5TCU|1|B|U|611
5TCU|1|B|U|612
5TCU|1|B|G|613
5TCU|1|B|U|614
5TCU|1|B|A|615
5TCU|1|B|G|616
5TCU|1|B|A|617
5TCU|1|B|A|618
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain L4
- 50S ribosomal protein L21
- Chain LC
- 50S ribosomal protein L3
- Chain LE
- 50S ribosomal protein L32
- Chain LO
- 50S ribosomal protein L15
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