HL_5TCU_047

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGUAAAUG

Length

9 nucleotides

Bulged bases

5TCU|1|B|A|658, 5TCU|1|B|A|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_047 not in the Motif Atlas

Homologous match to HL_4WF9_019

Geometric discrepancy: 0.4587

The information below is about HL_4WF9_019

Detailed Annotation

Other HL

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

5TCU|1|B|C|654
5TCU|1|B|A|655
5TCU|1|B|G|656
5TCU|1|B|U|657
5TCU|1|B|A|658
5TCU|1|B|A|659
5TCU|1|B|A|660
5TCU|1|B|U|661
5TCU|1|B|G|662

Current chains

Chain B

23S RRNA

Nearby chains

Chain LJ

50S ribosomal protein L4