HL_5TCU_072

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5TCU|1|B|A|1940

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_072 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.3542

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5TCU|1|B|G|1937
5TCU|1|B|U|1938
5TCU|1|B|A|1939
5TCU|1|B|A|1940
5TCU|1|B|C|1941
5TCU|1|B|U|1942
5TCU|1|B|A|1943
5TCU|1|B|U|1944
5TCU|1|B|A|1945
5TCU|1|B|A|1946
5TCU|1|B|C|1947

Current chains

Chain B

23S RRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain E

Transfer RNA; tRNA