HL_5TCU_078

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5TCU|1|B|A|2295, 5TCU|1|B|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_078 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1215

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5TCU|1|B|C|2291
5TCU|1|B|U|2292
5TCU|1|B|A|2293
5TCU|1|B|A|2294
5TCU|1|B|A|2295
5TCU|1|B|A|2296
5TCU|1|B|G|2297
5TCU|1|B|G|2298
5TCU|1|B|U|2299
5TCU|1|B|A|2300
5TCU|1|B|A|2301
5TCU|1|B|C|2302
5TCU|1|B|G|2303

Current chains

Chain B

23S RRNA

Nearby chains

Chain L9

50S ribosomal protein L27

Chain LP

50S ribosomal protein L16