HL_5TCU_080

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_080 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1731

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5TCU|1|B|U|2351
5TCU|1|B|G|2352
5TCU|1|B|U|2353
5TCU|1|B|A|2354
5TCU|1|B|A|2355
5TCU|1|B|A|2356
5TCU|1|B|G|2357
5TCU|1|B|G|2358

Current chains

Chain B

23S RRNA

Nearby chains

Chain E

Transfer RNA; tRNA

Chain L9

50S ribosomal protein L27

Chain LP

50S ribosomal protein L16