HL_5TCU_081

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_081 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1376

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5TCU|1|B|C|2382
5TCU|1|B|C|2383
5TCU|1|B|U|2384
5TCU|1|B|A|2385
5TCU|1|B|C|2386
5TCU|1|B|A|2387
5TCU|1|B|A|2388
5TCU|1|B|G|2389

Current chains

Chain B

23S RRNA

Nearby chains

Chain L9

50S ribosomal protein L27

Chain LH

50S ribosomal protein L35

Chain LO

50S ribosomal protein L15