HL_5TCU_098

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

5TCU|1|E|C|17, 5TCU|1|E|G|18, 5TCU|1|E|G|19, 5TCU|1|E|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_098 not in the Motif Atlas

Homologous match to HL_5E81_205

Geometric discrepancy: 0.2261

The information below is about HL_5E81_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TCU|1|E|C|13
5TCU|1|E|A|14
5TCU|1|E|G|15
5TCU|1|E|U|16
5TCU|1|E|C|17
5TCU|1|E|G|18
5TCU|1|E|G|19
5TCU|1|E|U|20
5TCU|1|E|A|21
5TCU|1|E|G|22

Current chains

Chain E

P-site tRNA CHAIN

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain LK

50S ribosomal protein L5