HL_5TCU_108

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

5TCU|1|B|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_108 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.3179

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5TCU|1|B|U|686
5TCU|1|B|G|687
5TCU|1|B|A|688
5TCU|1|B|A|689
5TCU|1|B|U|690
5TCU|1|B|A|691
5TCU|1|B|G|692

Current chains

Chain B

23S RRNA

Nearby chains

Chain LH

50S ribosomal protein L35

Chain LO

50S ribosomal protein L15

Chain LS

50S ribosomal protein L33 1