HL_5TCU_109

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGAAAUUC

Length

9 nucleotides

Bulged bases

5TCU|1|B|A|826, 5TCU|1|B|U|829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_109 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2241

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5TCU|1|B|G|823
5TCU|1|B|A|824
5TCU|1|B|G|825
5TCU|1|B|A|826
5TCU|1|B|A|827
5TCU|1|B|A|828
5TCU|1|B|U|829
5TCU|1|B|U|830
5TCU|1|B|C|831

Current chains

Chain B

23S RRNA

Nearby chains

Chain L2

50S ribosomal protein L2