HL_5TCU_112

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCUCGUCC

Length

9 nucleotides

Bulged bases

5TCU|1|B|C|1362, 5TCU|1|B|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_112 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2387

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5TCU|1|B|G|1360
5TCU|1|B|G|1361
5TCU|1|B|C|1362
5TCU|1|B|U|1363
5TCU|1|B|C|1364
5TCU|1|B|G|1365
5TCU|1|B|U|1366
5TCU|1|B|C|1367
5TCU|1|B|C|1368

Current chains

Chain B

23S RRNA

Nearby chains

Chain L5

50S ribosomal protein L22

Chain LQ

50S ribosomal protein L17