HL_5TCU_121

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAGUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_121 not in the Motif Atlas

Homologous match to HL_9DFE_002

Geometric discrepancy: 0.3851

The information below is about HL_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5TCU|1|B|U|87
5TCU|1|B|G|88
5TCU|1|B|U|89
5TCU|1|B|A|90
5TCU|1|B|A|91
5TCU|1|B|G|92
5TCU|1|B|U|93
5TCU|1|B|A|94
5TCU|1|B|A|95

Current chains

Chain B

23S RRNA

Nearby chains

Chain L6

50S ribosomal protein L23

Chain L7

50S ribosomal protein L24

Chain LB

50S ribosomal protein L29