HL_5TGA_012

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

5TGA|1|1|U|545, 5TGA|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGA_012 not in the Motif Atlas

Geometric match to HL_5VOE_001

Geometric discrepancy: 0.3215

The information below is about HL_5VOE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20535.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5TGA|1|1|G|542
5TGA|1|1|C|543
5TGA|1|1|C|544
5TGA|1|1|U|545
5TGA|1|1|C|546
5TGA|1|1|G|547
5TGA|1|1|G|548
5TGA|1|1|U|549

Current chains

Chain 1

25S ribosomal RNA

Nearby chains