HL_5TGA_091

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGA_091 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.1793

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5TGA|1|2|A|829
5TGA|1|2|U|830
5TGA|1|2|U|831
5TGA|1|2|U|832
5TGA|1|2|U|833
5TGA|1|2|G|834
5TGA|1|2|U|835
5TGA|1|2|U|836
5TGA|1|2|G|837
5TGA|1|2|G|838
5TGA|1|2|U|839
5TGA|1|2|U|840
5TGA|1|2|U|841
5TGA|1|2|C|842
5TGA|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A