HL_5TGM_014

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCUUGAAACAC

Length

12 nucleotides

Bulged bases

5TGM|1|1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_014 not in the Motif Atlas

Geometric match to HL_4V7M_040

Geometric discrepancy: 0.3879

The information below is about HL_4V7M_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67079.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5TGM|1|1|G|639
5TGM|1|1|U|640
5TGM|1|1|C|641
5TGM|1|1|U|642
5TGM|1|1|U|643
5TGM|1|1|G|644
5TGM|1|1|A|645
5TGM|1|1|A|646
5TGM|1|1|A|647
5TGM|1|1|C|648
5TGM|1|1|A|649
5TGM|1|1|C|650

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain N8

60S ribosomal protein L28

Chain O2

60S ribosomal protein L32