HL_5TGM_078

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

5TGM|1|2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_078 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1472

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5TGM|1|2|G|243
5TGM|1|2|A|244
5TGM|1|2|U|245
5TGM|1|2|G|246
5TGM|1|2|A|247
5TGM|1|2|U|248
5TGM|1|2|U|249
5TGM|1|2|C|250

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S Ribosomal Protein S11

Chain S4

40S ribosomal protein S4-A