HL_5TGM_092

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_092 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.1914

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5TGM|1|2|A|812
5TGM|1|2|U|813
5TGM|1|2|U|814
5TGM|1|2|U|815
5TGM|1|2|U|816
5TGM|1|2|G|817
5TGM|1|2|U|818
5TGM|1|2|U|819
5TGM|1|2|G|820
5TGM|1|2|G|821
5TGM|1|2|U|822
5TGM|1|2|U|823
5TGM|1|2|U|824
5TGM|1|2|C|825
5TGM|1|2|U|826

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S Ribosomal Protein S11