HL_5TGM_100
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 5TGM|1|2|G|1226, 5TGM|1|2|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TGM_100 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.1905
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
5TGM|1|2|A|1221
5TGM|1|2|U|1222
5TGM|1|2|U|1223
5TGM|1|2|G|1224
5TGM|1|2|A|1225
5TGM|1|2|G|1226
5TGM|1|2|A|1227
5TGM|1|2|G|1228
5TGM|1|2|C|1229
5TGM|1|2|U|1230
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C5
- 40S Ribosomal Protein S15,40S ribosomal protein S15,40S Ribosomal Protein S15
- Chain D9
- 40S ribosomal protein S29-A
- Chain E1
- Ubiquitin-40S ribosomal protein S31
Coloring options: