HL_5TGM_102

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5TGM|1|2|U|1297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_102 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1257

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5TGM|1|2|C|1292
5TGM|1|2|U|1293
5TGM|1|2|U|1294
5TGM|1|2|A|1295
5TGM|1|2|A|1296
5TGM|1|2|U|1297
5TGM|1|2|U|1298
5TGM|1|2|G|1299

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

ES17