HL_5TGM_215

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

5TGM|1|6|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_215 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1519

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5TGM|1|6|A|1238
5TGM|1|6|U|1239
5TGM|1|6|U|1240
5TGM|1|6|G|1241
5TGM|1|6|A|1242
5TGM|1|6|G|1243
5TGM|1|6|A|1244
5TGM|1|6|G|1245
5TGM|1|6|C|1246
5TGM|1|6|U|1247

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c5

40S Ribosomal Protein S15,40S ribosomal protein S15,40S Ribosomal Protein S15

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31