HL_5TGM_249

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

5TGM|1|6|C|489, 5TGM|1|6|U|493, 5TGM|1|6|U|494, 5TGM|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_249 not in the Motif Atlas

Homologous match to HL_8P9A_234

Geometric discrepancy: 0.3098

The information below is about HL_8P9A_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64292.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5TGM|1|6|G|486
5TGM|1|6|G|487
5TGM|1|6|G|488
5TGM|1|6|C|489
5TGM|1|6|C|490
5TGM|1|6|C|491
5TGM|1|6|A|492
5TGM|1|6|U|493
5TGM|1|6|U|494
5TGM|1|6|C|495
5TGM|1|6|G|496
5TGM|1|6|G|497
5TGM|1|6|G|498
5TGM|1|6|U|499
5TGM|1|6|C|500
5TGM|1|6|U|501

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A