HL_5TZS_001

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

5TZS|1|1|U|77

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_001 not in the Motif Atlas

Homologous match to HL_4V88_187

Geometric discrepancy: 0.0004

The information below is about HL_4V88_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38701.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5TZS|1|1|C|70
5TZS|1|1|A|71
5TZS|1|1|A|72
5TZS|1|1|U|73
5TZS|1|1|U|74
5TZS|1|1|U|75
5TZS|1|1|A|76
5TZS|1|1|U|77
5TZS|1|1|A|78
5TZS|1|1|C|79
5TZS|1|1|A|80
5TZS|1|1|G|81

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 3

rpS6_ES6