HL_5TZS_002

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5TZS|1|1|U|158, 5TZS|1|1|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_002 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.0006

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5TZS|1|1|G|154
5TZS|1|1|U|155
5TZS|1|1|A|156
5TZS|1|1|A|157
5TZS|1|1|U|158
5TZS|1|1|U|159
5TZS|1|1|C|160

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 3

rpS6_ES6

Chain X

Kre33