HL_5TZS_007

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

5TZS|1|1|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_007 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.0004

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5TZS|1|1|C|393
5TZS|1|1|C|394
5TZS|1|1|U|395
5TZS|1|1|G|396
5TZS|1|1|A|397
5TZS|1|1|G|398
5TZS|1|1|A|399
5TZS|1|1|A|400
5TZS|1|1|A|401
5TZS|1|1|C|402
5TZS|1|1|G|403
5TZS|1|1|G|404

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 3

rpS6_ES6

Chain 8

rpS8_eS8

Chain V

Enp2