HL_5TZS_009

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

5TZS|1|1|A|452, 5TZS|1|1|U|454, 5TZS|1|1|C|455

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_009 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.0006

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5TZS|1|1|U|450
5TZS|1|1|A|451
5TZS|1|1|A|452
5TZS|1|1|U|453
5TZS|1|1|U|454
5TZS|1|1|C|455
5TZS|1|1|A|456

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 5

rpS4_ES4

Chain F

rpS24_eS24