HL_5U4I_003

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

5U4I|1|A|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_003 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.1022

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5U4I|1|A|G|123
5U4I|1|A|G|124
5U4I|1|A|A|125
5U4I|1|A|A|126
5U4I|1|A|A|127
5U4I|1|A|C|128

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain U

50S ribosomal protein L23