HL_5U4I_006

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5U4I|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1428

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5U4I|1|A|G|194
5U4I|1|A|A|195
5U4I|1|A|A|196
5U4I|1|A|A|197
5U4I|1|A|C|198
5U4I|1|A|A|199
5U4I|1|A|U|200
5U4I|1|A|C|201

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28